Protein Info for ABZR87_RS12480 in Ralstonia sp. UNC404CL21Col

Annotation: endolytic transglycosylase MltG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details TIGR00247: conserved hypothetical protein, YceG family" amino acids 4 to 328 (325 residues), 288.1 bits, see alignment E=4.7e-90 PF02618: YceG" amino acids 40 to 326 (287 residues), 295.2 bits, see alignment E=2.6e-92

Best Hits

KEGG orthology group: K07082, UPF0755 protein (inferred from 98% identity to rpf:Rpic12D_1467)

Predicted SEED Role

"FIG004453: protein YceG like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (332 amino acids)

>ABZR87_RS12480 endolytic transglycosylase MltG (Ralstonia sp. UNC404CL21Col)
MLSFLKRLVLLAILIVLAAAGGVVWWAQQPVSLAASPLEVVIKPNSSVISVGKQLANAGV
GVQPQLFSLLARATGNAKSLKAGGYALETGATPMSILDKMARGDVTHYVVTVIEGWSMRQ
MRAVVDAEPALKHDTAGMSDADLMRKIGAPEANPEGLFFPDTYLFARGSSDVELYRHAYQ
AMQKRLNDAWAKRSQDLPYKTPYEALTMASIIEKETGQKLERPMIAAVFVNRLRKNMLLQ
TDPTVIYGLGAGFDGNLRKRDLQTDTPYNTYTRTGLPPTPIALPGMASLQAALNPASSDA
LYFVARGDGSSQFSTNLTDHNRAVNKYQRGQP