Protein Info for ABZR87_RS12395 in Ralstonia sp. UNC404CL21Col

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 transmembrane" amino acids 38 to 56 (19 residues), see Phobius details amino acids 62 to 86 (25 residues), see Phobius details amino acids 98 to 119 (22 residues), see Phobius details amino acids 128 to 153 (26 residues), see Phobius details amino acids 167 to 188 (22 residues), see Phobius details amino acids 198 to 217 (20 residues), see Phobius details amino acids 245 to 268 (24 residues), see Phobius details amino acids 280 to 303 (24 residues), see Phobius details amino acids 313 to 332 (20 residues), see Phobius details amino acids 338 to 361 (24 residues), see Phobius details amino acids 376 to 400 (25 residues), see Phobius details amino acids 406 to 426 (21 residues), see Phobius details PF00083: Sugar_tr" amino acids 30 to 224 (195 residues), 63.7 bits, see alignment E=1.6e-21 amino acids 235 to 426 (192 residues), 45.3 bits, see alignment E=6.1e-16 PF07690: MFS_1" amino acids 32 to 382 (351 residues), 86.3 bits, see alignment E=2e-28

Best Hits

KEGG orthology group: None (inferred from 96% identity to rpf:Rpic12D_1451)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (433 amino acids)

>ABZR87_RS12395 MFS transporter (Ralstonia sp. UNC404CL21Col)
MNDATLQTPLPASVAAAPKPVGQARLIAACSIGNALEMYDFTVYSFFALMIGKLFFPSDS
AYGSLLLAVATFGIGFVMRPLGGFVIGNYADRHGRKAAMTLTIGLMVIGTLCLAVAPTYA
TAGLFGPVVILAGRLLQGFSLGGEIGASTAMLMESGGVRGRGFRVSWQLGSQGIAALCGA
LTAAILYGGLSPEALQSWGWRVPFFLGLLIAPVGLYIRSHLDETHTAEAHAPSPLGTLFR
DHGGLVVKGVLTIIGGTVGTYLVIYFMPTYMIRELHLPPSLSLLAGCVTGLTSFGASLLS
GWLADRLPRRKPLVVGATLVTVAALYPAFWMMTHYPSVPLVLVLSALLTGTLYLGTTPML
LMMMELLPIKVRASGLSVIYAIGVTVFGGSCQFVVTWLLARTGNPLSPAFYMMACSAITL
LTVLSLREARDTH