Protein Info for ABZR87_RS12360 in Ralstonia sp. UNC404CL21Col

Annotation: DUF817 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 transmembrane" amino acids 41 to 61 (21 residues), see Phobius details amino acids 67 to 87 (21 residues), see Phobius details amino acids 99 to 120 (22 residues), see Phobius details amino acids 126 to 149 (24 residues), see Phobius details amino acids 162 to 180 (19 residues), see Phobius details amino acids 186 to 203 (18 residues), see Phobius details amino acids 215 to 234 (20 residues), see Phobius details amino acids 254 to 274 (21 residues), see Phobius details PF05675: DUF817" amino acids 32 to 268 (237 residues), 347.3 bits, see alignment E=2.5e-108

Best Hits

KEGG orthology group: None (inferred from 73% identity to bgd:bgla_2g13060)

Predicted SEED Role

"4Fe-4S ferredoxin, iron-sulfur binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (283 amino acids)

>ABZR87_RS12360 DUF817 domain-containing protein (Ralstonia sp. UNC404CL21Col)
MRAGLRARFTYWRDRSGAWAARHGQLAAGLHEFVVFGIKQAWACLFGGLMVALLIGTHFW
YPADAPIARYDALTMAAVIIQIALLWLKLETWDEAKVILMFHVAGTGMEVFKTAVGSWIY
PEASVLRIGGVPLFTGFMYASVGSYIARAWREFDLRFTHHPPLAVTALLSLGIYVNFFLH
HYWWDLRYVLMALIAMAFRRCWIHFRIDRVHRRMPFLLGFTLVALFIWLAENIGTFTRTW
LYPNQLQGWEMVSIAKLGAWFLLTIMSYVMVTLVNPPRPVSDA