Protein Info for ABZR87_RS12285 in Ralstonia sp. UNC404CL21Col

Annotation: transglycosylase domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1011 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF00912: Transgly" amino acids 128 to 337 (210 residues), 77.5 bits, see alignment E=9e-26

Best Hits

KEGG orthology group: None (inferred from 98% identity to rpf:Rpic12D_1423)

Predicted SEED Role

"Membrane carboxypeptidase (penicillin-binding protein)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1011 amino acids)

>ABZR87_RS12285 transglycosylase domain-containing protein (Ralstonia sp. UNC404CL21Col)
MKRIRRPIIIKLALVVALVLAVAALLVAHEFRTSAWQARYFAHLAQSQTFPVKPGPNTSA
RYPNSGPYDERLGYHDLPTFLDRLRSRGYIVAQQAVPSKEMVARMDSGMNPPYREKDQAG
LELLDDDGRPIYRVRHPERVYDSFASVPPLLVNSLLAIENRTLLQTEYPKRNPAVEWSRL
ARAVWDRALHVVNPAHESPGGSTLATQIEKYRHSPEGRTESPSEKLRQMFSASARAYLNG
EDTTAARHQLAVDYLNTVPLGARAGFGEIQGIGDALWVWYGRDFAQVNALLAAQSTAPLP
DRALAYKEALSLLVSQRRPSYYLENLDELETLTNAYLRVLAASGVIPPALRDAAIAQSLK
QQALNTRVPPPPLEHKGTNAVRVNLAGMLGISRMYALDRLDLTASSTLDAPLQRDVSAEL
RKLRDPANAKAAGLVGDMMLERGDPRGVTYSFTLYERAPGGNRVLVQADTFDKPFDINEG
VKLDLGSTAKLRTLVTYLQIVAELHKRYADQPVAALRKVNIPVQNPIERWAVDYLAHTQD
RSLAAMLDASMERKYSGNAGEWFATGGGMQSFENFEKWEGTQNFTVREGLKHSVNLVFVR
IMRDISRYFQHQLPNAGAEALTNPESPQRQIYLRRFADREGKLFMGRFYAKYKGKTDQER
EAILVQSTRATPVRLATIYRSIDPEAGPGKLAAFIRSYLPGAKLDEAELTNLYEKYSVQR
FDLADRGYIAKLHPLELWLVAYLRTHPQATLAQVNEASADERLSVYKWLLQSHRKGAQDK
RIKQMLEIEAFQQIHAMWKRLGYPFESLVPSYGTAIGASADRPASLAELMGIIENDGIRL
PSVRIDRLRFAANTPYEVMLCRDPNAGERVLPPEIPPLVKSALAGVVEGGTAKRISGTFV
QKDGKPIAIGGKTGTGDNRFKTFSRGGGLISERVVSRSGAFVFYLGDRYFGTVVAYVAGA
DAAKYKFTSALTVQVLKVLAPTLMNHLDLQDEAPAFNCKMPQATAPEQKLD