Protein Info for ABZR87_RS12235 in Ralstonia sp. UNC404CL21Col

Annotation: carbon monoxide dehydrogenase subunit G

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 transmembrane" amino acids 202 to 220 (19 residues), see Phobius details PF10604: Polyketide_cyc2" amino acids 3 to 148 (146 residues), 39.9 bits, see alignment E=5.1e-14 PF06240: COXG" amino acids 6 to 148 (143 residues), 145.5 bits, see alignment E=8.8e-47

Best Hits

KEGG orthology group: None (inferred from 96% identity to rpf:Rpic12D_1413)

Predicted SEED Role

"carbon monoxide dehydrogenase G protein" in subsystem CO Dehydrogenase or Carbon monoxide dehydrogenase maturation factors

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (224 amino acids)

>ABZR87_RS12235 carbon monoxide dehydrogenase subunit G (Ralstonia sp. UNC404CL21Col)
MELTQTHLLPVPLQTAWDALNDPAVLQRCIPGCESITAAEAGANPAYDIAMTAAVGPVKA
RFKGRMELADVAPPRSYTLHFDGQGGAAGFGKGSAQVQLTPEGPTVTRLSYTATAQVGGK
LAQIGSRLVDGAARKLADEFFQRFAAEFGPAETAGIDGHAAPVDGMQATQAIPDLAAAQL
QAHGAPPGHPTNVSPALQPRNPWPWIIVAVVAVAAAYLFLHHGA