Protein Info for ABZR87_RS12030 in Ralstonia sp. UNC404CL21Col

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 343 transmembrane" amino acids 27 to 50 (24 residues), see Phobius details amino acids 55 to 75 (21 residues), see Phobius details amino acids 81 to 99 (19 residues), see Phobius details amino acids 105 to 125 (21 residues), see Phobius details amino acids 133 to 152 (20 residues), see Phobius details amino acids 191 to 209 (19 residues), see Phobius details amino acids 240 to 262 (23 residues), see Phobius details amino acids 279 to 307 (29 residues), see Phobius details amino acids 316 to 335 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 54 to 332 (279 residues), 166.2 bits, see alignment E=4.4e-53

Best Hits

KEGG orthology group: K10440, ribose transport system permease protein (inferred from 91% identity to bgf:BC1003_3584)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (343 amino acids)

>ABZR87_RS12030 ABC transporter permease (Ralstonia sp. UNC404CL21Col)
MLEMTSDQPQPVKTQRKQHHRDLIQKFAALGSLVALVIAFSATSAAFFSVGNFMTVALQV
TSIAYLGVAATCVIITGGIDLSVGSVLALSGVVAALLVKMGVPVPLAMLAGVAVGAVCGW
VNGICITRMGLPPFIATLGMMLVARGLALQITGARPVSGLGDAFGELGNGALFRISHIGA
DGFPDTVFPGIPYPVVIMLALFVAVSVLLSRTSLGRHIYAVGSNAEAARLSGVNVQGVKL
FTYVLSGLLAGMTGCVLMSRLVTAQPNEGVMYELDAIASAVIGGTSLMGGVGTVSGTAIG
AFVIGVLRNGLNMNGVSSFIQQIIIGVVILGTVWIDQLRNRKL