Protein Info for ABZR87_RS12000 in Ralstonia sp. UNC404CL21Col

Annotation: DUF2182 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 61 to 85 (25 residues), see Phobius details amino acids 106 to 133 (28 residues), see Phobius details amino acids 141 to 165 (25 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details amino acids 213 to 219 (7 residues), see Phobius details amino acids 235 to 256 (22 residues), see Phobius details PF09948: DUF2182" amino acids 69 to 249 (181 residues), 148.9 bits, see alignment E=8.3e-48

Best Hits

KEGG orthology group: None (inferred from 91% identity to rpf:Rpic12D_1378)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (257 amino acids)

>ABZR87_RS12000 DUF2182 domain-containing protein (Ralstonia sp. UNC404CL21Col)
MTNTLSSVELPREHALSERGFLAVSALLFIASTAATVAWCNAMPAMSEMPIAWMPMCGQT
WWSFAAAFVAMWTVMMAAMMLPSLLPMLRQYRVALHLAGEQNVDALTALAGVAYFAVWAL
IGVMVLALGAALAQLEMTWPVLARVAPVASGAVVLAAGALQFSAWKARQLARCRAVPAPG
RAAWRFGLRLGLRCAGSCAGLTAILLVTGVMDLRAMAAVSAAITLERLAPAGQRMARCVG
AVAIGAGLLLMLRAVLP