Protein Info for ABZR87_RS11420 in Ralstonia sp. UNC404CL21Col

Annotation: DegT/DnrJ/EryC1/StrS aminotransferase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 386 PF01041: DegT_DnrJ_EryC1" amino acids 19 to 379 (361 residues), 369.5 bits, see alignment E=3e-114 PF00155: Aminotran_1_2" amino acids 44 to 134 (91 residues), 23.2 bits, see alignment E=5.5e-09 PF00266: Aminotran_5" amino acids 65 to 173 (109 residues), 21.9 bits, see alignment E=1.2e-08

Best Hits

KEGG orthology group: None (inferred from 99% identity to rpi:Rpic_1197)

Predicted SEED Role

"UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-)" in subsystem Lipid A-Ara4N pathway ( Polymyxin resistance ) (EC 2.6.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.6.1.-

Use Curated BLAST to search for 2.6.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (386 amino acids)

>ABZR87_RS11420 DegT/DnrJ/EryC1/StrS aminotransferase family protein (Ralstonia sp. UNC404CL21Col)
MTQTTATAELPFLPFVRPTIDEATIAAVADVLRSGWITSGPKVAAFEAALSEYFGGRIVR
TFANGTATMEVALRIAGIGPGDEVITTPISWVATSNVVLTVGAKPVFVDIDPVTRNIDLD
KVEAAITPRTKAIIPVYLSGLPVDMDRLYDIARRHKLRVVEDAAQAIGSRWGDKRIGEIG
DLVSFSFQANKNITTIEGGALVLNTPEEAVLAEKYRLQGVVRTGFDGMEVDLVGGKFNLT
DVNAVIGLGQFAQLEAVTARRAALARRYFAGMRAADIESFGVELPVENFTNTNWHMFQIV
LPLDRLKVDRAGFMAGLKTLGIGAGVHYPPIHLFKLYRELGWKPGMFPVAERIGRAIVTL
PMFAGMEDSDVDRVVSAVRQLCAQYQ