Protein Info for ABZR87_RS11270 in Ralstonia sp. UNC404CL21Col

Annotation: amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 230 transmembrane" amino acids 23 to 49 (27 residues), see Phobius details amino acids 67 to 88 (22 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 154 to 174 (21 residues), see Phobius details amino acids 196 to 216 (21 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 24 to 116 (93 residues), 87.7 bits, see alignment E=3e-29 PF00528: BPD_transp_1" amino acids 40 to 223 (184 residues), 76.6 bits, see alignment E=1.1e-25

Best Hits

Swiss-Prot: 33% identical to GLNM_BACSU: Probable glutamine ABC transporter permease protein GlnM (glnM) from Bacillus subtilis (strain 168)

KEGG orthology group: K10040, putative glutamine transport system permease protein (inferred from 57% identity to rsl:RPSI07_mp0645)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (230 amino acids)

>ABZR87_RS11270 amino acid ABC transporter permease (Ralstonia sp. UNC404CL21Col)
MLEILHDYLALFLVGSWPNGPLGGVAVTLVLSVLGLVMSFPIAVLIGLAHVSPWRWLRRI
AGVWSRLVRGIPLLMIIFWAYFAVPLLVGKEVSAFTTAVCAIIVYESAFLSQIVRAGLEG
LPRGQMEAARSNGLSWLQSMRYVQLPQALTNMLPSIVNQFVSIIKATSLAYVIGVPELTY
SAAQVNTITLTKPLETFLVLAAFYFVLCFAISRFAGQLERRIARHRAGLA