Protein Info for ABZR87_RS11100 in Ralstonia sp. UNC404CL21Col

Annotation: sn-glycerol-3-phosphate import ATP-binding protein UgpC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 PF00005: ABC_tran" amino acids 20 to 161 (142 residues), 112.7 bits, see alignment E=3.3e-36 PF17912: OB_MalK" amino acids 235 to 290 (56 residues), 27.1 bits, see alignment E=9.5e-10 PF08402: TOBE_2" amino acids 284 to 353 (70 residues), 29.1 bits, see alignment E=1.4e-10

Best Hits

Swiss-Prot: 92% identical to UGPC_RALSO: sn-glycerol-3-phosphate import ATP-binding protein UgpC (ugpC) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K05816, sn-glycerol 3-phosphate transport system ATP-binding protein [EC: 3.6.3.20] (inferred from 98% identity to rpf:Rpic12D_1188)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.3.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>ABZR87_RS11100 sn-glycerol-3-phosphate import ATP-binding protein UgpC (Ralstonia sp. UNC404CL21Col)
MAKLSLRNVQKHYANLQVVHGIDMEIGDGEFIVIVGPSGCGKSTLLRMVAGLEPITGGEV
WIGDRVVNDLEPAERDIAMVFQNYALYPHMSVFDNMAYGLKIRGLPKSDIQARVEQAAGI
LELGKLLDRKPRQLSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLELKDLH
RRLRTTSLYVTHDQVEAMTLADRMMVLNGGRVEQIGTPLEVYSRPASTFVAGFIGSPPMN
LVPVSRNAGGDTQIRVDGAKQGDAAATLGHLPMGLHLPERALMGLRPEHIEPCSADQAIA
LIDVRVVEALGADAFAYGTLAGHPIVVRLEPHASVKAGDKLPITASAEHLHWFDPQTTRR
IEALA