Protein Info for ABZR87_RS10695 in Ralstonia sp. UNC404CL21Col

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 551 PF00005: ABC_tran" amino acids 38 to 195 (158 residues), 105.8 bits, see alignment E=1.2e-33 amino acids 315 to 467 (153 residues), 123.6 bits, see alignment E=3.9e-39 PF02463: SMC_N" amino acids 51 to 241 (191 residues), 41.4 bits, see alignment E=4.6e-14 PF08352: oligo_HPY" amino acids 246 to 272 (27 residues), 22.2 bits, see alignment (E = 6e-08) amino acids 518 to 542 (25 residues), 20.3 bits, see alignment (E = 2.4e-07)

Best Hits

KEGG orthology group: K13896, microcin C transport system ATP-binding protein (inferred from 99% identity to rpf:Rpic12D_1111)

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (551 amino acids)

>ABZR87_RS10695 ABC transporter ATP-binding protein (Ralstonia sp. UNC404CL21Col)
MTRVDLRSSTPKSDGPLLRLDDLCVHFESEHGEVTEAVKHVSLDLHAGERFALVGESGSG
KSVTALSIMRLLADAQYSGRILLEGRDLLAASEREMRGLRGADVAMVFQEPMTALNPLYT
IGNQIVETLELHEGLDKRAAKARAIALLERTGIAEAPRRFDAFPHQLSGGQRQRAMIAMA
LACSPKLLLADEPTTALDVTVRMQILQLLRELQAEFGMAIMLITHDLNMVRAFAERVGVM
ERGVLVETGNTADVFAAPQHPYTVRLLESRPQRDVLPLVPLAPVLLEADKLTVTYERHRP
GFAGWFRTDPFTAVDAVSLQLREGETLGIVGESGSGKTTLAQTLLGLQTAKSGDLRFLGN
SLLRISRDERRAVRARMQVVFQDPYGSLSPRMTIEEIVGEGLALHQPHVNATERRHRVIE
ALREVGLDRTALGRYPHEFSGGQRQRIAIARVLILKPQLLVLDEPTSALDVSIQQQVLSL
LSALQKKYNLSYLFISHDLAVIRAMSHRVVVMKDGKVVEEGDTEAVLASPSHPYTCKLMA
AASLNPSRDNP