Protein Info for ABZR87_RS10340 in Ralstonia sp. UNC404CL21Col

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 PF00126: HTH_1" amino acids 6 to 63 (58 residues), 64 bits, see alignment E=1e-21 PF03466: LysR_substrate" amino acids 88 to 293 (206 residues), 148.4 bits, see alignment E=1.9e-47

Best Hits

Swiss-Prot: 40% identical to DMLR_ECOLI: HTH-type transcriptional regulator DmlR (dmlR) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 69% identity to mms:mma_2341)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>ABZR87_RS10340 LysR family transcriptional regulator (Ralstonia sp. UNC404CL21Col)
MDRVSDLEFFTQLVKQGSLAALARELGVTPPAITARLAQLEKRLGVRLLNRTTRRLSVTH
EGEIYLATGARLLEELQELEQVVSSSRGTPKGLLRINATFGFGRRHVAPAIVEFARRYPE
VEVQLELTDRSVNLTDKAFDIGIWFGTVPDSRMVARKIVSNKRVLCASPDYLKRAGMPQV
PRDLQSHQCIVLRESDAAYGTWYLTRGTRQETIKVRGVLSSNDGETGVLWALAGYGILMR
SEWDIHEHVRAGRLVPVLADWALPVADIFAVYPERANLSAKVTAFIDFLTDWFGKEAAWA
DAAR