Protein Info for ABZR87_RS09785 in Ralstonia sp. UNC404CL21Col

Annotation: patatin-like phospholipase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 781 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF01734: Patatin" amino acids 56 to 247 (192 residues), 119.7 bits, see alignment E=1.9e-38 PF01103: Omp85" amino acids 499 to 765 (267 residues), 39.5 bits, see alignment E=5.2e-14

Best Hits

KEGG orthology group: K07001, (no description) (inferred from 82% identity to rsl:RPSI07_2414)

Predicted SEED Role

"putative patatin-like phospholipase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (781 amino acids)

>ABZR87_RS09785 patatin-like phospholipase family protein (Ralstonia sp. UNC404CL21Col)
MAFLTAFLSRRRGARLAAAVVTAFVALATLSPVVHGQTAAAPTQANTESTRPRIGLVLSG
GGARGYAHIGVLKMLERMRVPVDVIAATSMGAVVGGLYASGMRADALEQKLSQVDLSDIA
FDRNDRAKLPQSLREDDFQYPIGLSAGYGDGRLKLPAGLVQGNRLLALLKNWTAQWPDNI
DFSRLPIPFKAMATDLATGDGVILDHGSLPLAMRASMAVPGLFAPIEVGGRTLVDGGLVS
NLPVQLARDMGADIIIAVNIGSDLQRPEDLASPAAVTQQMITILVGQNVRAQKALLRGKD
VLIEPQLSELSFTDFAKGPQGVLQGERAAQGVEAKLAALSLSPQAYAAYRTAHEPQGTLV
AGARIDAIDVTTSGRVPPARVRQLVKVREGDAYDAEALNRELSALATTGDFETVTQQLVE
QNGVHTLKIDAHEKSWGNQFFLFGLGMSTNFDGRGAFNVNLGHRYPWLTQSGLEWRNDIV
LGSNRASIHTELRQPLWQARGFYVAPYAEYSRRRSDLYFDDEAPTKDAKPFNSMTMETAR
AGVDLGIPLGRKGELRLGVNYMSKSAAFNYLALTDEGALDLPTLRAKQPAFRAQLTLDQL
DDPLFPRSGYYFYSSVEAGFGSLDKKFNTAQAKGLWATSYGRHTFNVALEGAGQFGVNSP
TRENGGNTGNGANEGFFLGGFQHLSAYAQDQFNGQYMLYGRLTYLYDLRIDDLLGLRAPV
FGASAEAGNVWQLRNNFGTGPYLKSGSVFVGGNSPIGPLYFGFAVAPQGVWNVYLQLGRV
F