Protein Info for ABZR87_RS09775 in Ralstonia sp. UNC404CL21Col

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 610 transmembrane" amino acids 39 to 62 (24 residues), see Phobius details amino acids 84 to 106 (23 residues), see Phobius details amino acids 161 to 179 (19 residues), see Phobius details amino acids 185 to 204 (20 residues), see Phobius details amino acids 270 to 292 (23 residues), see Phobius details amino acids 304 to 314 (11 residues), see Phobius details PF00664: ABC_membrane" amino acids 42 to 305 (264 residues), 46 bits, see alignment E=5.7e-16 PF00005: ABC_tran" amino acids 379 to 532 (154 residues), 115.4 bits, see alignment E=3.2e-37

Best Hits

KEGG orthology group: K06147, ATP-binding cassette, subfamily B, bacterial (inferred from 98% identity to rpi:Rpic_0836)

Predicted SEED Role

"Lipid A export ATP-binding/permease protein MsbA" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (610 amino acids)

>ABZR87_RS09775 ABC transporter ATP-binding protein (Ralstonia sp. UNC404CL21Col)
MLLRRLEKLIDPFRPLPDTQPPANVWRFYAYFLREVRGVFAFLLVVGLLGALIEVALFDF
LGRIVDMIQATPGPAFFGRHRNELLWMAFVALIARPVIFGLHDVLVHQVINPNLSNLIRW
QNHRYVLKQSLTFFQNDFAGRIAQRIMQTGFSLRDSAVQSVDALWHVVIYAISAMVLFAR
ADWWLVVPLLVWIGCYVAALSYFVPRVKARSVIATESRSKLMGRIVDGYTNITTLKLFAH
TQHEESYARDAMAEQTDKTRLSGRMISGMDFTITAMNGLLIVGTSALALWLWSEGRVSAG
TIALTTGLVIRINNMSGWIMWVVNGIFENVGQVQDGMQTIALPRAVIDQPDAKPLHVTRG
EVRFEHVGFHYGKGSGVIEGLDLVVRPGERIGLVGPSGAGKSTLVNLLLRLYDVERGRIL
VDGQDIAAVTQESLREQIGMVTQDTSLLHRSIRDNLRYGKPDSTEAELMQAVHRARADEF
IPQLSDVQGRRGFDALVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEA
AIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLDGGRIVESGTHAELLEHGGLYARLWA
HQTGGFVGVD