Protein Info for ABZR87_RS09655 in Ralstonia sp. UNC404CL21Col

Annotation: ribosome biogenesis factor YjgA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 PF04751: DUF615" amino acids 29 to 182 (154 residues), 192.2 bits, see alignment E=2.6e-61

Best Hits

Swiss-Prot: 85% identical to Y944_RALSO: UPF0307 protein RSc0944 (RSc0944) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K09889, ribosome-associated protein (inferred from 98% identity to rpi:Rpic_0815)

Predicted SEED Role

"FIG138315: Putative alpha helix protein" in subsystem Putative TldE-TldD proteolytic complex

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (205 amino acids)

>ABZR87_RS09655 ribosome biogenesis factor YjgA (Ralstonia sp. UNC404CL21Col)
MSRASRHNPTYLQPVVRTDIGDEDDPDTPKSKSQRKREVNALQDLGAALEALPKDKLAKV
PLPEKLVDALREAKRTTAHEGKRRQMQYIGKLMRALTDEEVEAIRRVLATFVGASKAETA
RLHAIERWRDRLIASDDAITEFIAAHPDADVQALRTLVRNARKEAQLAKPPKSSRELFQM
VKQALSGNDRDVDDADQPEAEDDEA