Protein Info for ABZR87_RS09605 in Ralstonia sp. UNC404CL21Col

Annotation: ribosome maturation factor RimM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 183 TIGR02273: 16S rRNA processing protein RimM" amino acids 16 to 180 (165 residues), 134.5 bits, see alignment E=1.2e-43 PF01782: RimM" amino acids 17 to 103 (87 residues), 52.7 bits, see alignment E=4.1e-18 PF05239: PRC" amino acids 110 to 178 (69 residues), 39.9 bits, see alignment E=3.6e-14

Best Hits

Swiss-Prot: 85% identical to RIMM_RALSO: Ribosome maturation factor RimM (rimM) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K02860, 16S rRNA processing protein RimM (inferred from 95% identity to rpf:Rpic12D_0876)

Predicted SEED Role

"16S rRNA processing protein RimM" in subsystem Ribosome biogenesis bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (183 amino acids)

>ABZR87_RS09605 ribosome maturation factor RimM (Ralstonia sp. UNC404CL21Col)
MRPGTGSNPTLPDDLIEVGYVGGAYGIRGWIKVQLHGDADALLNARTWWLKPASGPATLA
DWRVFPVGTSREHSGTVVAGSPAAPDRNVAEALRGYTVWVSRADFPEPEDDEFYWVDLIG
ATVVNEQQETLGTVSGLIDNGAHQILRIVGEGEVERLVPFVEVYVKSVDVAGKRIVVDWG
LDY