Protein Info for ABZR87_RS09410 in Ralstonia sp. UNC404CL21Col

Annotation: DUF748 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1260 transmembrane" amino acids 46 to 69 (24 residues), see Phobius details PF05359: DUF748" amino acids 182 to 329 (148 residues), 90.4 bits, see alignment E=1.4e-29 amino acids 401 to 544 (144 residues), 61.7 bits, see alignment E=9.8e-21 amino acids 617 to 768 (152 residues), 126.3 bits, see alignment E=1.2e-40 amino acids 870 to 1016 (147 residues), 140 bits, see alignment E=7.4e-45

Best Hits

KEGG orthology group: None (inferred from 94% identity to rpi:Rpic_0766)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1260 amino acids)

>ABZR87_RS09410 DUF748 domain-containing protein (Ralstonia sp. UNC404CL21Col)
MSTSPDSRPDLQSNTNSWRARLDRVRSTAGWQRAAQVGTSRRTKRIGIGVLIFLVVFGLL
GAFGGPPLLRHLAQTQLSKLLDRPVSVGKIGINPYTLRLDVDQLHIAERDGKTPFVDVGH
LHVNASWSSIFRRAPVIEELSIDAPHVRIVRTAEQRFNFSDIVDKLTQPDNPPKPKSDEP
ARFAFANLQLTNGTIDFADQPLGAQHKVDGLQIGVPFLASLPADVDIFVQPLLAARIDGA
PLHFAGKTKPFAESLESNLNIKIDGLDLPRYLGYVPGPLPVAVPQGKLTTDLTIDFQKPK
SGAPVLRVHGTAGLDNLQVVDARKAPLVAAKQVRATLADVRPLDNVFHLDALTLDGVRVD
ATRGADGAINFAQLGGKPSHAEAKPAKPEPAPTAKPKPLDVVVSKLQLANSTVHWHDATT
QPAADLTLEDLRGDIGVRTLGGLTTLDVGAKLAQGGTLNVKGNTSLEKNTGELELKLEGV
KLAGIGPYLRQAGAPQLQNGALSADGKVALDFGPDKFNVRAEPLTASLTDLSLAPASGKD
TALRAKLLRADVKSFDLSARTLALNEVRADGLQIDALRKKDGTTTLTLLDGPQPATGKSA
APAKSSAKSNAPAEKPWAVTVQTLKLDNSAVGFEDQSNSRPVKVRVEPLNVVVQNASTDL
GKPVNVQIGAGLGTKGKLDVRGEVVPQPLKADLRVNSQNVSLAGFDPYLDKSLNAAITSA
LLSMDGRLVLNQGKALTVNYQGNATLGNVRLQDRVSSDDFLRWRSLALNRIQANYDGTTP
RVRVGAVALSTFYARIIINPNGRLNLQDIRVQPTEERRSLTQSEPASASGAAASAPAAAP
VVASAPTAAPASAVTVTATGPTPKAGGADLRVDAITLQDGNIRFTDNFVKPNYTANLTAI
GGSIGTISTAANQTPADVTLRGSVDSTAPVDIHGKVNPLAPTAFVDLTAKADGVELTNLT
PYSAKYAGYPITKGKLTMDLHYLLDQGKLTADNHIFIDQLTFGDRVESKDATNLPVRLAV
ALLKNSRGEIDVRVPVSGSLDDPQFSIGGVILRAFVNLIARAVTAPFSLLASAFGGSGGE
ELGYIEFDPGTSNISQASVAKLDKLATALKDRPALKVDIVGRVDPEFDRDGLRREAVNRQ
IREQKLKDAGDAAEADTSVKPEEEAKYLERAYKAAKFPKPRNVIGLAKSLPPDEMRKLME
TNVQVTDADLRELAQRRANAVHVALAERVDPGRLFVVAPKLNADGIKDKGKTTRVDFSLK