Protein Info for ABZR87_RS09370 in Ralstonia sp. UNC404CL21Col

Annotation: ExeM/NucH family extracellular endonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 818 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 793 to 808 (16 residues), see Phobius details PF00932: LTD" amino acids 17 to 123 (107 residues), 49.1 bits, see alignment E=6.9e-17 PF03372: Exo_endo_phos" amino acids 462 to 754 (293 residues), 33.5 bits, see alignment E=3.8e-12

Best Hits

KEGG orthology group: K07004, (no description) (inferred from 92% identity to rpf:Rpic12D_0828)

Predicted SEED Role

"Nuclease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (818 amino acids)

>ABZR87_RS09370 ExeM/NucH family extracellular endonuclease (Ralstonia sp. UNC404CL21Col)
MRLHFLLPVVLFTALPAHAELLISEYVEGSSNNKAIEIYNPDGIEADLGVYKIEQYNNGA
STPTASFSLSGKLAPGAVHVMAHSTLASALGTRVNQTAAFSFNGDNALTLTRSGVVVDRI
GQVGYQPPSGFWGTASDGTKDHTLRRKGTVKMGDANITAAFDPSPQWDAFNIDDFSDLGL
YNGQGTVTPPLATAVCGAPATHLADVQGAGATSPLAGQNVEIEAVVTADYSGTNGFNGFF
VQQPDAQRRRLPGVSEGLFVYAPGVSARAGDLVHLVGKVEEKYGQTQLTLATNGIASCAS
GHSVTPVDVTLPVADAKALAAYEGMLVRLPQTLTVSETYELGRYGSVLLSNGRLPLPTNV
APPANGAAAQAAANALNRIVLDDGSNQQNPGTVRYPAPGLSAANPVRAGYTVSGVQGVLE
MRYNAWRLQPVPGAAAPAFNAAANPRAGAPARHAQADVRVASFNVLNYFNGDGKGAGFDD
PANRGAKTQAEFERQEAKIVAAIRAIDADVVGLMEIENDGYGSLSAIRRLTSQLGADWRY
VEPGVPKLGGDAITVAIIYNGRTVEPVGVPATLAIDDKNRQPLARSFRRIGGTQNFTVVV
NHLKSKGCSGATGKDADQGDGQSCWNSTRVRAAGLIADWLATSPTGVADIGKLLIGDLNS
YAKEDPVVLLANKGYADMVEKFVGKDAYSYVYGGESGYIDHALATSGLAERVRAVHEWHI
NADEPIALEYSFAYKSAEQQQTFYAPDAYRSSDHDPVLVDLALNTQNAGGGTSPEGDAAT
GGATGSAGAGGAGAVDPILGLALTAAAVAQARRRARRS