Protein Info for ABZR87_RS09275 in Ralstonia sp. UNC404CL21Col

Annotation: tripartite tricarboxylate transporter TctB family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 140 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 66 to 95 (30 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details PF07331: TctB" amino acids 3 to 132 (130 residues), 70.2 bits, see alignment E=1e-23

Best Hits

KEGG orthology group: None (inferred from 99% identity to rpf:Rpic12D_0811)

Predicted SEED Role

"Tricarboxylate transport protein TctB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (140 amino acids)

>ABZR87_RS09275 tripartite tricarboxylate transporter TctB family protein (Ralstonia sp. UNC404CL21Col)
MFIVAGAAFAILARSYRMGTAGSMGPGYFPFWLGVVLVLLGVVVLVQSLSRKGVVDRIPR
WDVKTLLWILGSVVLFGLLLQPLGLVLSLVVLVFVSSMASHEFTLKGAAGTAIVMVVMSL
AAFIYGLKLQFPVWPAFIGN