Protein Info for ABZR87_RS09045 in Ralstonia sp. UNC404CL21Col

Annotation: acyl-CoA dehydrogenase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 PF02771: Acyl-CoA_dh_N" amino acids 17 to 109 (93 residues), 51.8 bits, see alignment E=2e-17 PF02770: Acyl-CoA_dh_M" amino acids 126 to 201 (76 residues), 36.4 bits, see alignment E=9.8e-13 PF08028: Acyl-CoA_dh_2" amino acids 235 to 365 (131 residues), 60.8 bits, see alignment E=3.4e-20 PF00441: Acyl-CoA_dh_1" amino acids 237 to 362 (126 residues), 33.9 bits, see alignment E=6.7e-12

Best Hits

Swiss-Prot: 44% identical to SFNC_PSEPU: Probable FMNH2-dependent monooxygenase SfnC (sfnC) from Pseudomonas putida

KEGG orthology group: None (inferred from 97% identity to rpi:Rpic_0695)

Predicted SEED Role

"Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (390 amino acids)

>ABZR87_RS09045 acyl-CoA dehydrogenase family protein (Ralstonia sp. UNC404CL21Col)
MKLDDLHQLPDLTHLLAELAATAAQRDQHGGHAAHEKAAIARAGLLPLVIPSQYGGSGVS
WADAFAAVRAIAAVDSSLGHLLAFQYLQTATVYLYGSDAQRERFLRPTAELGWWWGNAVN
PLDHRLRAQRSGSGWLLDGEKGFCSGTLGSDVMVVSAHDAASGNPVVAVVPTARYGITVR
DDWHPIGQRQTDSASVQFRHVQVSEDEVLVRPEVVLTPYQTLRSCIAQNVLVNLYTGIAA
GALDEARKHTLQSSRPWITSGVERAADDPYQIHRFGEMRVQWLAAEALADRAIQRLDRAW
RKGAALSAEERAEVSLATAEAKVLAHRAALFVAQELFEATGARSTKAALALDRFWRNART
HTLHDPLDYKLRAIGRYALEGILPDATIYG