Protein Info for ABZR87_RS08930 in Ralstonia sp. UNC404CL21Col

Annotation: pilus assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1321 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF05567: Neisseria_PilC" amino acids 780 to 1136 (357 residues), 132.5 bits, see alignment E=1e-42

Best Hits

KEGG orthology group: K02674, type IV pilus assembly protein PilY1 (inferred from 72% identity to rsc:RCFBP_20689)

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1321 amino acids)

>ABZR87_RS08930 pilus assembly protein (Ralstonia sp. UNC404CL21Col)
MKIIRGLLAVFAMGWVSVMGAANSVPTVAISTVPLYGRSQNVHPNLMLSLSVEFPTTGAA
YRGAYDKTQTYLGYFNATKCYNYDATNGYFVISGAANSSFECSGNFSGNFMNWAASSAID
EFRMALTGGDRVIDTSTQTVLQRAVLRSDFFRSGSYFPVKSINGSGNVSAPNKVTPFSYS
TLYIVSCGNHIFFADQDYSSTSCSNPGGYGDQYDRKGNLIERRSFRAQVQVCDSNEGSTR
TDLCLNYNGNYKPVGQMQLNADRMRFAAFGYLNDSTNDTTLDQDERYGGVLRAPMKYVGS
TAVDTSLNAITNPAPEFDPVTGIFAANPLNAAEGTSGVINYLNKFGRTSAQLSGQPMGYL
GGPTDNPTGNYKTFDPVSEMFYESIRYLQFKQGPTPEAVAGLPNSTYSDNFPVYSTWDTD
PMLSGCQRNYAFLIGDINTHEDHYIPGNQVTGQGDPARTVSSYDNFDVRAWTNKVGALET
NTPAAGNSNPLSSSFTNLGDINHATSHWASYYLAGVAYWAHTYGFRPDMPTARVTTFVID
VNENGNGTVGATQRQSQFFLAAKYGGFQDNNNDGNPFKTFGPDGITVVNNNTEWEAAPTG
SNIPYNWFLGGQPATMIAAIKNIFAQIVSYAGTLSGVALSSARITGGSGNNTYVYAPGFD
QKWNGRLAAYQLTLNGTNVQVSSQAAWEAGALLTTAYGGTSGTKYTGRSVFTTNSDTGKG
VTFAWANISQSQQTLLNTSPSSGTNDGNGQNRLNYLLGDQSKENSSVNSSGIFRARNSIL
GDIIGSAPTYVSDPSGAITDTGYTTFTGTYNGRTPMIYVGANDGMVHGFNANTGAEVFGY
VPNAVFSGLNQLTSTAYAHRLFVDATPVAAEAQVNGNWRTVLTGGFGGGAQGVYALDVTD
PTGSKGGSFTASNVLWEFTDKDDADMGNVMGTPLIVKLQTGTDTSKTPNVPIYKWFVMVG
NGLNSNAVDGSYNANAPAALFLLSLDKPAGTPWQRNTNYFKIVTPIPGGTPPYTTANGLS
TPAIVPAVNGRAMAAYAGDLQGNLWKFVLSGDSTTWNETSTALPAYGGGTTKKPLFAATD
NYSTPGRNQPITMAPQIVYAPGGYMILFGTGKYYETSDTGTPTQYNSFYGIYDDGGSTNY
ITDRSKLNKLTATASSDGKSYSIAYATGAAAVGYASPRKPGWVLDFPDSTEKQVTAAVAS
DGVVYFNSLTGGDACGNNGSSRSYALNVLTGMPLGGTTTGYQSSTGLLGAPSLIVISIAN
GSRDSVGGTVETKTKIVLSPGTQGLTVGNSNGSGGSGGSVSQITQRRGRAGWREVRNFTL
N