Protein Info for ABZR87_RS08920 in Ralstonia sp. UNC404CL21Col

Annotation: GspH/FimT family pseudopilin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 transmembrane" amino acids 17 to 38 (22 residues), see Phobius details PF07963: N_methyl" amino acids 12 to 36 (25 residues), 24.5 bits, see alignment (E = 1.5e-09) TIGR02532: prepilin-type N-terminal cleavage/methylation domain" amino acids 15 to 36 (22 residues), 25.1 bits, see alignment (E = 5.4e-10) PF12019: GspH" amino acids 52 to 181 (130 residues), 37.8 bits, see alignment E=2.5e-13

Best Hits

KEGG orthology group: K08084, type IV fimbrial biogenesis protein FimT (inferred from 53% identity to rso:RSc0722)

Predicted SEED Role

"Type IV fimbrial biogenesis protein FimT" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (200 amino acids)

>ABZR87_RS08920 GspH/FimT family pseudopilin (Ralstonia sp. UNC404CL21Col)
MRGVLIHRSNGRGSRGFTLLELMATITVAAVILMLAGPSLNDFMRKQRVITAVDSITSAI
GQARSIAIATNSYVTIAPVDGTSWNSGVRVFSEGQSPNGTYSATADKLLGQYDAMPTGMT
VAFKSTANIASSTSSQTSLTYSPVGYTVTTPGKVAQVNATFIVKFVDGKPPSRGVIINAL
GRARTCDPAVDSTCVPTATQ