Protein Info for ABZR87_RS08565 in Ralstonia sp. UNC404CL21Col
Annotation: glutamate-1-semialdehyde 2,1-aminomutase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 97% identical to GSA_RALPJ: Glutamate-1-semialdehyde 2,1-aminomutase (hemL) from Ralstonia pickettii (strain 12J)
KEGG orthology group: K01845, glutamate-1-semialdehyde 2,1-aminomutase [EC: 5.4.3.8] (inferred from 98% identity to rpf:Rpic12D_0558)MetaCyc: 60% identical to glutamate-1-semialdehyde 2,1-aminomutase subunit (Salmonella enterica enterica serovar Typhimurium)
Glutamate-1-semialdehyde 2,1-aminomutase. [EC: 5.4.3.8]
Predicted SEED Role
"Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)" in subsystem Experimental tye or Heme and Siroheme Biosynthesis (EC 5.4.3.8)
MetaCyc Pathways
- superpathway of heme b biosynthesis from glutamate (9/10 steps found)
- tetrapyrrole biosynthesis I (from glutamate) (6/6 steps found)
- adenosylcobalamin biosynthesis II (aerobic) (20/33 steps found)
- adenosylcobalamin biosynthesis I (anaerobic) (20/36 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 5.4.3.8
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (433 amino acids)
>ABZR87_RS08565 glutamate-1-semialdehyde 2,1-aminomutase (Ralstonia sp. UNC404CL21Col) MSTPSRSAALFERAQKTIPGGVNSPVRAFRSVGGTPRFIAKAAGPYLWDADGTRYIDYVG SWGPMIVGHAHPEVVRAVQDVAADSFSFGAPTEAEVVMAEEICKLVPSIEQVRLVSSGTE ATMSALRLARGFTGRDLIVKFEGCYHGHADSLLVKAGSGLLTFADTTQNAPSSAGVPEDV VKHTMVLPYNDVAALREAFARHGKEIAAVIVEPVAGNMNLVRGSNEFHQAMRSLCTEHGA VLIFDEVMTGFRVALGCAQELYGIKPDLTCLGKVIGGGMPAAAFGGRRDIMGFLAPLGNV YQAGTLSGNPLAVAAGLTTLRLIAAEGFHDRLAAQTRKLVDGLADIAREVGVPFAADSVG GMFGIYFREGVPTSFAEVTKSDVGRFNAFFHAMLDQGVYLAPSAFEAGFVSATHDDGILE ATFEAARKAFRAV