Protein Info for ABZR87_RS07840 in Ralstonia sp. UNC404CL21Col

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 435 transmembrane" amino acids 29 to 45 (17 residues), see Phobius details amino acids 51 to 75 (25 residues), see Phobius details amino acids 87 to 108 (22 residues), see Phobius details amino acids 115 to 140 (26 residues), see Phobius details amino acids 152 to 174 (23 residues), see Phobius details amino acids 188 to 209 (22 residues), see Phobius details amino acids 238 to 263 (26 residues), see Phobius details amino acids 275 to 297 (23 residues), see Phobius details amino acids 306 to 326 (21 residues), see Phobius details amino acids 332 to 358 (27 residues), see Phobius details amino acids 370 to 392 (23 residues), see Phobius details amino acids 398 to 419 (22 residues), see Phobius details PF00083: Sugar_tr" amino acids 16 to 230 (215 residues), 78.5 bits, see alignment E=5.1e-26 PF07690: MFS_1" amino acids 19 to 325 (307 residues), 78.8 bits, see alignment E=3.9e-26

Best Hits

KEGG orthology group: None (inferred from 92% identity to reh:H16_B2067)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (435 amino acids)

>ABZR87_RS07840 MFS transporter (Ralstonia sp. UNC404CL21Col)
MQPSQPGGRQPARAATAAFVGTMIEWYDFYIYATAAALVFGPLFFPGGDPFLSTLASFGT
FAVGFFARPLGGIVFGHWGDRIGRKKALMITLTMMGLATIGIGLLPTYATAGALAPVLLV
LLRVVQGVAVGGEWGGAVLMAGEHAPKGRRTFFASFAQLGSPAGLILSLLAFRLVTSMEK
DAFMEWGWRLPFLASAVLLLVGVAIRLGVNESPEFAQVQAQRKTAKLPIAEVWRTARVPV
LLCIGANTIGIAGVYFTNTFMIAYTTQYLSLSKTLILDCLFVVAFIQFLAQPLAAWLAEK
LGGARFLKLMALMAMASPYPMFLLVQTRQAPLMVLGIALAVVCMASFYSVIAGFVSGVFE
TRVRYSAISLSYQVCGAVAGGLTPLVGTILAQRFHGEWWPLAVFYTLLAGISLLCIAAID
GRQRGRATAGDTVGA