Protein Info for ABZR87_RS07715 in Ralstonia sp. UNC404CL21Col

Annotation: DMT family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 44 to 64 (21 residues), see Phobius details amino acids 76 to 99 (24 residues), see Phobius details amino acids 105 to 124 (20 residues), see Phobius details amino acids 135 to 154 (20 residues), see Phobius details amino acids 166 to 184 (19 residues), see Phobius details amino acids 196 to 218 (23 residues), see Phobius details amino acids 230 to 248 (19 residues), see Phobius details amino acids 257 to 276 (20 residues), see Phobius details amino acids 282 to 300 (19 residues), see Phobius details PF00892: EamA" amino acids 16 to 148 (133 residues), 69 bits, see alignment E=2.3e-23 amino acids 163 to 299 (137 residues), 66.4 bits, see alignment E=1.6e-22

Best Hits

KEGG orthology group: None (inferred from 98% identity to rpi:Rpic_0395)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (301 amino acids)

>ABZR87_RS07715 DMT family transporter (Ralstonia sp. UNC404CL21Col)
MATATDAVRRPLDGTAIGLMVVLCMCWGFQQVAIKVAAHDVGPVMQAGVRSAIASVLVFA
FALWRGTCLSLRDGTLAGGLMAGVLFGVEFLCIFIGLGYTTASRMAVFLYTAPIFTALGL
HFFVPGEHLRPRQWAGIGIAFAGIVLAFADGVLHPAAGPSTSLGDALGVVAGALWGATTI
VVRASKLSEAPAAKTLLYQLAVSAVLLLLMAAGTGQAFTANLTPTALASLAYQSVLIAFA
SYLTWFWLLRRYLASRLSVFSFLTPLFGVAFGVLLLHEPVGLRFALAATLVLSGILLVNL
R