Protein Info for ABZR87_RS07380 in Ralstonia sp. UNC404CL21Col

Annotation: FAD/FMN-binding oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1345 PF12447: DUF3683" amino acids 19 to 143 (125 residues), 178.9 bits, see alignment E=1.1e-56 PF01565: FAD_binding_4" amino acids 193 to 338 (146 residues), 83.5 bits, see alignment E=4.3e-27 PF02913: FAD-oxidase_C" amino acids 461 to 576 (116 residues), 24.6 bits, see alignment E=6.9e-09 amino acids 727 to 815 (89 residues), 63.4 bits, see alignment 1e-20 PF13183: Fer4_8" amino acids 859 to 938 (80 residues), 31.5 bits, see alignment 7.2e-11 PF02754: CCG" amino acids 1069 to 1158 (90 residues), 28.7 bits, see alignment 4e-10 amino acids 1195 to 1268 (74 residues), 14.3 bits, see alignment 1.3e-05 PF11880: DUF3400" amino acids 1301 to 1345 (45 residues), 81.7 bits, see alignment (E = 7.8e-27)

Best Hits

Predicted SEED Role

"FAD/FMN-containing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1345 amino acids)

>ABZR87_RS07380 FAD/FMN-binding oxidoreductase (Ralstonia sp. UNC404CL21Col)
MNAPLLIDAKLTAQDAAPRLREIPYNYTSFSDREIVIRLLGESAWQILDELRAERRTGRS
ARMLYEVLGDIWVVRRNPYLQDDLLDNPKRRQMLIDALNHRLAEIEKRRVADHDSHHDPV
GDERATKVEQLVVHARRAVKAFQEEFAQVYDLRRRAQKVLGRVTAKDNIKFDGLSRVSHV
TDATDWRVEYPFVVLTPDTEEEIAGIVKGCFELGLTIIPRGGGTGYTGGAVPLTPFSAVI
NTEKLERLDAVEMTDLPGVDHPVATIYSGAGVVTRRVADAADKAGLVFAVDPTSIDASCI
GGNVAMNAGGKKAVLWGTALDNLAWWRMVDPDGNWLEVQRLNHNLGKIHDAPVVTFELKW
FDGNAPVGAKLLRTETLTIEGRKFRKEGLGKDVTDKFLAGLPGVQKEGCDGIITSARWIL
HRMPKSIRTVCLEFFGQARDAIPSIVEIKDYLDAETKKPGGAILAGLEHLDERYLRAVGY
ATKSKRNAFPKMVLIGDIVGDDDDAVARATSEVIRLANGKSGEGFVAVSPEARKKFWLDR
SRTAAIAKHTNAFKINEDVVIPLNRMGEYTDGIERINIELSIKSKLKLTDALLDFFAGSN
LPLGRTDDANEIPSAELLEDRVQQAQQLLRATRARWQYLLDHLDTPVTTARASLIGLGLG
YLAQTIDDRLVNQPDANLFHLLQDRTIRVSWKAEIRAELRKIFNGGEFKPILDEAQAIHK
KVLRGRVFVALHMHAGDGNVHTNIPVNSDDYDMLQDAHKAVARIMTLARSLDGVISGEHG
IGITKLEFLTDEEIADFAAYKRRVDPNGRFNKGKLLRDINDPQGLPADLRNAYTPSFGLM
GHESIIMQQSDIGAISESIKDCLRCGKCKPVCATHVPRANLLYSPRNKILATSLLIEAFL
YEEQTRRGVSIKHWEEFADVGDHCTVCHKCVTPCPVKIDFGDVSMNMRNLLRKMGQKKFN
PGTAAAMFYLNATNPETINLTRKVMFDWGYKAQRLGNDILKKFAKKQTAHPPATVGRPPV
REQVIHFINKKMPGNLPKKTARALLDIEDNEIVPIIRNPKVTTPDSEAVFYFPGCGSERL
FSQVGLATQAMLWHAGVQTVLPPGYLCCGYPQRGTGQFDKAEKIVTDNRVLFHRVANTLN
YLDIKTVVVSCGTCYDQLAGYEFDKIFPGCRIIDIHEYLLEKGVKIDGVQGTRYMYHDPC
HTPIKTMDPTKLVNQLMGGNIGADGQTRAIEKNDRCCGESGTLAISRPDISTQVRFRKEE
EMQKGADKLRSLGQTSGQGGEAFNGDVKILTSCPACLQGLSRYTEDVSVQADYIVVEMAR
HVLGETWLQDYVAQANAGGIERVLV