Protein Info for ABZR87_RS07295 in Ralstonia sp. UNC404CL21Col

Annotation: YeeE/YedE family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 144 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 54 to 74 (21 residues), see Phobius details amino acids 80 to 101 (22 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details PF04143: Sulf_transp" amino acids 16 to 131 (116 residues), 31.1 bits, see alignment E=9.4e-12

Best Hits

KEGG orthology group: K07112, (no description) (inferred from 88% identity to rpf:Rpic12D_0329)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (144 amino acids)

>ABZR87_RS07295 YeeE/YedE family protein (Ralstonia sp. UNC404CL21Col)
MSIDFAHFTPGAALAGGLVIGLAAAVLVLGSGRIAGISGIVGGLLQRPQGDMGWRVAFLI
GLVAAPLIAAWLGHPVVPDIAAGWGEVLAAGFLVGIGTRYAGGCTSGHGVCGLSRGSVRS
LVATLTFMASGIVTVFVVRHVVGG