Protein Info for ABZR87_RS07255 in Ralstonia sp. UNC404CL21Col

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 35 to 53 (19 residues), see Phobius details amino acids 62 to 80 (19 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details amino acids 138 to 160 (23 residues), see Phobius details amino acids 167 to 186 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 92% identity to rpf:Rpic12D_0321)

Predicted SEED Role

"FIG017861: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (224 amino acids)

>ABZR87_RS07255 membrane protein (Ralstonia sp. UNC404CL21Col)
MHRLTAFARGAAGVGAVVAYQVGAHYAAATPGAHGLGLAMALVPPLAIALVAATRSRHRA
KLLPLWLLVCGALWMARAPLAAHFDWGLYLEHASFNLMMAYVFGRTLAAGREPLCTRFAH
MVHGTLTPRIARYSRRITLAWTLFFLATAAVSTLLFATASTVTWSTFANYLSLPLVGVMF
VAEYLCRRIVLRGEPRSSLFDAVRAYRQSEQSGHAAPIATERPR