Protein Info for ABZR87_RS07010 in Ralstonia sp. UNC404CL21Col

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 645 signal peptide" amino acids 1 to 47 (47 residues), see Phobius details PF14559: TPR_19" amino acids 210 to 272 (63 residues), 25.1 bits, see alignment E=7.5e-09 amino acids 273 to 336 (64 residues), 32.8 bits, see alignment E=2.9e-11 PF13432: TPR_16" amino acids 272 to 331 (60 residues), 20.1 bits, see alignment 3.1e-07

Best Hits

KEGG orthology group: None (inferred from 97% identity to rpf:Rpic12D_0280)

Predicted SEED Role

"FIG140336: TPR domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (645 amino acids)

>ABZR87_RS07010 tetratricopeptide repeat protein (Ralstonia sp. UNC404CL21Col)
MPHALSRSPATQRPRRFPRSRTALLAALVAGGLTSLPAWSSQSTIAAPLIAQAAQEGGTG
GRAAVQIERSRPRTGLLSSERTDLPRVALNEDIMYRVLASEVSLQRGLVEPAYRTYLALA
QDTRDPRFAQRATEIAFLTRSPAQALTAARLWVELSPTSMPARQVQQLLLVATGQWSEVE
PMLQAQLNKVSPGQRADALLQLQQQMSKSSDPVGAVDALQRIASHDMQRPETHLALARAK
VAAKDTTGALTELDTALKLRPGYEDAAILAAELRADGDPDAAIAGLRSFLKAAPASIDGH
LALARMYLVRNQQDKARAEFETLKKIAPNDARITLALGLLNLQQRQYDDAERYLKEYVAA
TAKSPTLSPEPGYQGLAQLAEEKRDYAGALGWVDKITGSANGDADGQTALAAGIKRGQLL
GKLRRIDEAQQTFDELVADSEDVPDGPRRQALMDGIRQAEIGMLMDAKAYGRARARVNEL
LQSDPDNVEYSYQLAMLEEHDGHYDNMETLLRKVIDLRPAQAIGYNALGYSLADRNVRLQ
EAQELLEKAVSLAPDDPYIADSLGWVKYRRGDLPAATDILRKAWTAAPQAEIGAHLGEVL
WQSGKQDDARQIWTEASKLDVNDTTLRDTLRRFGQPVPNAPVSAN