Protein Info for ABZR87_RS07000 in Ralstonia sp. UNC404CL21Col

Annotation: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR00154: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
  • amino acids 11 to 285 (275 residues), 251.1 bits, E=8.7e-79
• PF00288: GHMP_kinases_N
  • amino acids 91 to 149 (59 residues), 57.8 bits, E=1.2e-19
• PF08544: GHMP_kinases_C
  • amino acids 211 to 272 (62 residues), 34.1 bits, E=2.9e-12

Best Hits

Swiss-Prot: 95% identical to ISPE_RALPJ: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (ispE) from Ralstonia pickettii (strain 12J)

KEGG orthology group: K00919, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC: 2.7.1.148] (inferred from 97% identity to rpf:Rpic12D_0278)

Predicted SEED Role

"4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)" in subsystem Isoprenoid Biosynthesis or polyprenyl synthesis (EC 2.7.1.148)

MetaCyc Pathways

• methylerythritol phosphate pathway II (8/9 steps found)
• methylerythritol phosphate pathway I (7/9 steps found)
• superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) (9/12 steps found)
• isoprene biosynthesis I (7/10 steps found)
• taxadiene biosynthesis (engineered) (9/13 steps found)
• superpathway of ergosterol biosynthesis II (11/26 steps found)

KEGG Metabolic Maps

• Biosynthesis of alkaloids derived from terpenoid and polyketide
• Biosynthesis of plant hormones
• Biosynthesis of terpenoids and steroids
• Terpenoid biosynthesis

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.7.1.148

Protein Sequence (289 amino acids)

>ABZR87_RS07000 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase (Ralstonia sp. UNC404CL21Col)
MSSAPVELRDCPAPAKLNLFLHVVGRRPDGYHLLQTVFQLIDWSDTLHFARRSDGRLVRT
TDIPGVPADDDLIIRAARLLQAETGCTYGVDIAIEKRLPMGGGIGGGSSDAATTLLALNR
LWGLDLPRTQLMAIGMKLGADVPFFVFGQNAFAEGIGEELTPVALPPAAFVVIHPRVHVP
TPAIFSDEGLTRDTPLTIITDFPDQQIVFAYGRNDLQAVAERKYGEIARALVWLRQFSPL
ARMTGSGACVFAPFDNVEQAQAVADQVPSEWEGWCAAGLSHHPLARFAV