Protein Info for ABZR87_RS06665 in Ralstonia sp. UNC404CL21Col

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 475 transmembrane" amino acids 22 to 43 (22 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 147 to 171 (25 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 210 to 229 (20 residues), see Phobius details amino acids 235 to 254 (20 residues), see Phobius details amino acids 275 to 297 (23 residues), see Phobius details amino acids 309 to 329 (21 residues), see Phobius details amino acids 339 to 359 (21 residues), see Phobius details amino acids 365 to 386 (22 residues), see Phobius details amino acids 407 to 430 (24 residues), see Phobius details amino acids 446 to 466 (21 residues), see Phobius details PF07690: MFS_1" amino acids 28 to 249 (222 residues), 85.9 bits, see alignment E=1.3e-28

Best Hits

KEGG orthology group: None (inferred from 89% identity to rso:RSc2324)

Predicted SEED Role

"Multidrug resistance protein B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (475 amino acids)

>ABZR87_RS06665 MFS transporter (Ralstonia sp. UNC404CL21Col)
MSPTSINADEASWLDLFRGANALRVLVLAAGVALHAINLYLTTTILPSVVDDIGGVAFYA
WNTTLFIVAPITGAGVAAQVIQHAGPRGAYLLGAAVFGGGSALCALAPTMPVLLIGRVLQ
GLGGGVLLSAPYVLMRTVLPEPLWPRALALLSGMWGIATLLGPAVGGVFAQYATWRLAFW
SLVALIGLAAAAAVVVLKPTSGHAEQPTPVPGRQLVLLAVAVVAASWSSVSATPWLGALG
MIAAAATMLAIRHVEMRSSRRILPADAYTGRTTLAALYGVSALLAVTVTCTEIFVPLFLQ
RLHGQSPLIAGYIAATASAGWTLGAILSATLRESSATRVIGAAPWACALGLLVLAMLVPT
GAGDAWMTGLIIVALTLVGLGVGVAWPHLANRIMTAVPAEDHDRASASIVTVQLVATALG
AALGGVVLNTLGTAGPSPDLGVASRWLFLLFAAAPVGALLIARAGLGTQPAPLAR