Protein Info for ABZR87_RS06660 in Ralstonia sp. UNC404CL21Col

Annotation: LysE family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 41 to 66 (26 residues), see Phobius details amino acids 72 to 90 (19 residues), see Phobius details amino acids 117 to 142 (26 residues), see Phobius details amino acids 149 to 173 (25 residues), see Phobius details amino acids 193 to 209 (17 residues), see Phobius details PF01810: LysE" amino acids 16 to 205 (190 residues), 116.2 bits, see alignment E=6.9e-38

Best Hits

KEGG orthology group: K05834, homoserine/homoserine lactone efflux protein (inferred from 98% identity to rpi:Rpic_0193)

Predicted SEED Role

"Homoserine/homoserine lactone efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (213 amino acids)

>ABZR87_RS06660 LysE family transporter (Ralstonia sp. UNC404CL21Col)
MTLQVWLAFFLAAWVIAISPGSGAILCMSHGLTHGVRRTSVTIAGLELGIVVILFIAGAG
LGALLIASEHAFMAIKIIGAMYLIYLGIVQWRTPIQINKPAEGEPVKVSGSGARRRFLVG
LLTNLTNPKGILFMVAVLPQFIDPAKPLLSQLGILAATMVFVDLIVMHGYALLASRAQRL
FRNPRALRWQSRFFGGMLMSIGAALFFVKRQTN