Protein Info for ABZR87_RS06610 in Ralstonia sp. UNC404CL21Col

Annotation: D-alanyl-D-alanine carboxypeptidase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF00768: Peptidase_S11" amino acids 37 to 252 (216 residues), 257.3 bits, see alignment E=2.1e-80 PF13354: Beta-lactamase2" amino acids 47 to 197 (151 residues), 53.5 bits, see alignment E=3.4e-18 PF07943: PBP5_C" amino acids 292 to 382 (91 residues), 82.6 bits, see alignment E=2.8e-27

Best Hits

KEGG orthology group: K07258, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC: 3.4.16.4] (inferred from 97% identity to rpi:Rpic_0183)

Predicted SEED Role

"D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)" in subsystem Peptidoglycan Biosynthesis (EC 3.4.16.4)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.4.16.4

Use Curated BLAST to search for 3.4.16.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (400 amino acids)

>ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein (Ralstonia sp. UNC404CL21Col)
MQTRFAHFTPSAFHSAAATAVAAAVLATALPAMAQPVPAPQVAARSWMLTDVTSGQVLGG
ANMDERIEPASLTKLMTAYLVFEAVRDGKLKYDQMITPTETVRTVKTDESRMFLEAGKPV
SLRELTQGLIIQSGNDAALVLAEAVGGTETNFVMLMNREAERLGMKNTHFMNAAGLPDPN
HYSTARDLSILTAALIKDFPQDYKFYSQKDFTYNNIKQSNRNRLLWLDPTVDGGKTGHTK
SAGYCLVTSANRPLPDVPGASRRLLSVIVGTKSDAIRTQESLKVLNYGYQFFDTVRLYQA
KEALQTPDVYKGQAKSVKLGVAEDKWITVPKGAGARLKPVLERKDPLIAPIAQGQQLGTV
KVMDGSTVVSEFPVVALEAVPEAGFIGRTIDAVKLWFKKK