Protein Info for ABZR87_RS06385 in Ralstonia sp. UNC404CL21Col

Annotation: CHASE3 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 179 to 199 (21 residues), see Phobius details PF05227: CHASE3" amino acids 37 to 167 (131 residues), 108.6 bits, see alignment E=3.8e-35 PF07730: HisKA_3" amino acids 247 to 313 (67 residues), 55.1 bits, see alignment E=1.4e-18 PF02518: HATPase_c" amino acids 355 to 446 (92 residues), 57.2 bits, see alignment E=3.2e-19

Best Hits

KEGG orthology group: None (inferred from 99% identity to rpf:Rpic12D_0150)

Predicted SEED Role

"Signal transduction histidine kinase, glucose-6-phosphate specific"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (480 amino acids)

>ABZR87_RS06385 CHASE3 domain-containing protein (Ralstonia sp. UNC404CL21Col)
MRSSLRSTLLLAGGILLTLGVLIASETGNIRLSQGYRQVIQSQQAETAINELLAELVNAE
AGQRGFLLTGKDEYLDPYNKAIPHIHALMAEIRDHYANDPDALKLFSETALQVSRKLTEM
ELTLIYGKRDLEVALDLVRTDFGKASMEAVRQGLDRLRQREIATVARSLEHAERDLALSR
YGIALITAVNIILLVVLGMQHAKRLAVTERERDMAEEESQKLDRMVRERTRQLSDLAAHL
QRVTEDEKTRLARELHDELGAILTATKMDLHWLRSRIHASEPAVSEKITRVMAHVDQGIQ
IKRRLIEDLRPTILLNLGLVEALSQLTEDVGTRNGWHTEVSLPDDMPKLTDDAAIALYRI
VQESLTNASKYAHATTVSVALDVGEEGVRLRVRDNGRGFPADIERRRMVGHHGLLGMEQR
AIALGGTLVIDSMPGGGVTIIVELPPNDAVFDRSAANEPSGMQALTGGIAPAPGRGGATV