Protein Info for ABZR87_RS06090 in Ralstonia sp. UNC404CL21Col

Annotation: YoaK family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 235 transmembrane" amino acids 25 to 47 (23 residues), see Phobius details amino acids 67 to 91 (25 residues), see Phobius details amino acids 102 to 122 (21 residues), see Phobius details amino acids 128 to 146 (19 residues), see Phobius details amino acids 198 to 231 (34 residues), see Phobius details PF06912: DUF1275" amino acids 23 to 233 (211 residues), 121 bits, see alignment E=2.9e-39

Best Hits

KEGG orthology group: None (inferred from 86% identity to rso:RSc0238)

Predicted SEED Role

"DUF1275 domain-containing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (235 amino acids)

>ABZR87_RS06090 YoaK family protein (Ralstonia sp. UNC404CL21Col)
MPSEAATAATAAPASARFLIAQGTLLAFVAGYVDVVGFAALFGLFTAHVTGNFVMIGLEL
AGSGQGVLAKLLALPMFVVAVAATKLAVTALARRGVAPLRPLLLVQAVLLLAFMAAGLLA
LPIQSPDAPATIVVGLIGVAAMGVQNAKARIVLSEHAPTTIMTGNTTQIVIDVVELLSPG
ATQKDVARTRLRKMVPPLAGFAIGAVLGALAFATLSFWCVLPPVGILVALAILQR