Protein Info for ABZR87_RS06065 in Ralstonia sp. UNC404CL21Col

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 transmembrane" amino acids 36 to 60 (25 residues), see Phobius details amino acids 105 to 125 (21 residues), see Phobius details amino acids 136 to 157 (22 residues), see Phobius details amino acids 183 to 207 (25 residues), see Phobius details amino acids 244 to 266 (23 residues), see Phobius details amino acids 286 to 307 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 117 to 303 (187 residues), 44 bits, see alignment E=1.1e-15

Best Hits

KEGG orthology group: K02054, putative spermidine/putrescine transport system permease protein (inferred from 73% identity to vap:Vapar_3535)

Predicted SEED Role

"ABC transporter permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (317 amino acids)

>ABZR87_RS06065 ABC transporter permease (Ralstonia sp. UNC404CL21Col)
MTTTAPSTSSEPSAASAPANDAPAAARRPVGPGLQALPFAAVFVVFFLIPLGLVAMVSFW
DFNEYALLPTFTLRNYAKLWEGCGHLNEYGDLCVTASTYLSTLRFALGTWALTLVLGFAL
AYFLAFHVRSAAVQTLLFVICTVPFWTSNVIRMISWIPLLGRNGLVNQTLQAMHLIDQPQ
DWLLYSNFSVVLAYVHLYTMFMIVPIFNSMMRIDRALLEAARDAGATAWQTLWHVIVPLS
RSGILIGSIFILTIVMGDFVTVGVMGGQQIASVGKMIQVQTSYLQFPLAAANAVVLLLTV
LMIIWGLTRVVDIRKEL