Protein Info for ABZR87_RS06060 in Ralstonia sp. UNC404CL21Col

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 transmembrane" amino acids 12 to 38 (27 residues), see Phobius details amino acids 78 to 99 (22 residues), see Phobius details amino acids 108 to 131 (24 residues), see Phobius details amino acids 164 to 186 (23 residues), see Phobius details amino acids 208 to 229 (22 residues), see Phobius details amino acids 263 to 286 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 90 to 281 (192 residues), 51.1 bits, see alignment E=7.2e-18

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 78% identity to aaa:Acav_1597)

Predicted SEED Role

"Putrescine transport system permease protein potI"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (298 amino acids)

>ABZR87_RS06060 ABC transporter permease (Ralstonia sp. UNC404CL21Col)
MQARFREPRAPGFWPLACLFALFVLFLYGPMLTIFALSFQGPDGGLTFPMNGLSLHWYRQ
LADGLGVVDIGAAFRRSLALGAVVMALTMGLSLLAALAFRKRLRGGGVLFYVTVASLIMP
SIVVSLGIGLQFRLIDTGLKALLTAMGMSDQADSFGSSLGLWTSALGAHLTWTLPFGLLI
MFAVFNRFNPAYEEAARDLGATPWQTFRHVVLPLIAPSLIGVGMFGFTLSWDEIARTSQA
IGDVNTLPLELQGLTTTVTTPSIYALGTLTTVVSFVVMGLTMLAIVRLRRRQSAGRVD