Protein Info for ABZR87_RS06030 in Ralstonia sp. UNC404CL21Col

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 PF00165: HTH_AraC" amino acids 149 to 188 (40 residues), 27.4 bits, see alignment 2.9e-10 PF12833: HTH_18" amino acids 162 to 240 (79 residues), 75.6 bits, see alignment E=3e-25

Best Hits

KEGG orthology group: None (inferred from 97% identity to rpi:Rpic_0083)

Predicted SEED Role

"PROBABLE TRANSCRIPTION REGULATOR PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (240 amino acids)

>ABZR87_RS06030 AraC family transcriptional regulator (Ralstonia sp. UNC404CL21Col)
MLDFRTYGLAAPPHSHDFMQVVMPARGILEMDVDGRGGRVDTHHAALIPAGATHAFEATG
ANRFIVFDIPGQTVDAPSLGGLADRVFFPLTPGLRALATWLQDAPIVDTVLANAWSSLAL
ATLAAHPANQSTQIRARPDARAERAWHAIEHRYAEPLTVDALAAEAGVSARRLATLFRAA
YGTTLHAHLAQVRLRHALTLLETTALPIAEVAARTGYYDQSALTRHLKAAHGITPAAVRR