Protein Info for ABZR87_RS05915 in Ralstonia sp. UNC404CL21Col

Annotation: patatin-like phospholipase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 transmembrane" amino acids 138 to 156 (19 residues), see Phobius details PF01734: Patatin" amino acids 10 to 182 (173 residues), 116 bits, see alignment E=1.3e-37

Best Hits

KEGG orthology group: K07001, (no description) (inferred from 98% identity to rpf:Rpic12D_0073)

Predicted SEED Role

"FIG00974128: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (306 amino acids)

>ABZR87_RS05915 patatin-like phospholipase family protein (Ralstonia sp. UNC404CL21Col)
MDRVERTAFVFAGGGSLGAIEAGMLRELVASGVVPDMVVGASAGAINAAFFACNPHAAGT
AQLEALWRSVRRADVMPWSWRAMFSMLGILGGRREHLVDASGLQRLLARHFAQTLLEAAT
LPLHVVATDMRTGAEVVLSSGAIVPAVLASAAIPGVFPPVRIGDRLLIDGGVANNTPISA
AIRLGATRVVVLPAGFACADRRAPRSAIEHALNALSLLVARQLVQDLERWAGQVPITVVP
PLCPLDVSPYDYARCGELIDRAAAATAAWLAADGLAATGIPGALREHDHSEDHPNCNADL
HGVHAA