Protein Info for ABZR87_RS05715 in Ralstonia sp. UNC404CL21Col

Annotation: TnsD family Tn7-like transposition protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 560 PF06527: TniQ" amino acids 4 to 151 (148 residues), 48.4 bits, see alignment E=1.6e-16 PF15978: TnsD" amino acids 207 to 311 (105 residues), 33.9 bits, see alignment E=1.8e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (560 amino acids)

>ABZR87_RS05715 TnsD family Tn7-like transposition protein (Ralstonia sp. UNC404CL21Col)
MCAPPIPGESLISQVGRYHVTSGNLTTRDTYAELFRRLPFQLTAWVPSYVGALGDRFFTR
PSQTIQCLLRESTMFPLLEMFTGAEFAARDEQSHIDAVLQGLPKHTAGAFNRTRLCPQCL
TENEDRYGTPAILNAHQIPGVSVCFRHGIPLLEQCPTCRCPFERKADLVLTPWRGCSACG
RKPTDQQVEGLLADEGDHAIAFARFAAQLLISGLRGASREGIVQLYRAGIHELGVTHRGA
VNRKELIRQIVDRYGEKFVKRVDPAFRTDRLSAWLHILIESATWEVHLGRHLLLSFFLYE
EAERFLTRYREIALHPRARLTKRLARTEVPDQPPLSGDLIGQVVAASKAIPNCDLDTLWR
EHYGLMKRLVRQNPGALDDLRKELERGSQRDYKSSGDTTPNSHPNDAFWAKELMQFAPRF
YNGAEYPERGTRQLLLRRIGWKHNPTSDLPRFPLLRKELAAACESPWHFYIRRILWALTQ
PSARAWSRSKVCKISGVEVRKGQVLMDYCALKVVPEVAGPSDVMRILRDWQIGLSWEGPC
PERVFSSVGRGYQRRTHGDG