Protein Info for ABZR87_RS05610 in Ralstonia sp. UNC404CL21Col

Annotation: YdcF family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 27 to 49 (23 residues), see Phobius details PF02698: DUF218" amino acids 69 to 229 (161 residues), 98.6 bits, see alignment E=1.4e-32

Best Hits

KEGG orthology group: None (inferred from 95% identity to rpf:Rpic12D_0039)

Predicted SEED Role

"PROBABLE LIPOPROTEIN TRANSMEMBRANE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (251 amino acids)

>ABZR87_RS05610 YdcF family protein (Ralstonia sp. UNC404CL21Col)
MSLTILCVLVIVAAVCAARGRRRPARGLAVFSGVLVIAIGCGPVPAWLLDSLEKPFENEP
QIQWGTRNAIVLLGAGTFRVGDEVEPGLFSYPRLVETTQLYQTCRKSDGDCKILVSGGDA
RHHGLPEATVYQRELVRLGVAKDDVLIEPRSMNTWQNAQFSRTVLSQYAPDRTVLVSSAI
HLRRSLLYFTHFGMAPIPVRADDLQAAASPLPMAYNFALTDFALHEWIGIARYHVYNALG
WNPARINPGDA