Protein Info for ABZR87_RS05030 in Ralstonia sp. UNC404CL21Col

Annotation: rod shape-determining protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 TIGR00904: cell shape determining protein, MreB/Mrl family" amino acids 9 to 340 (332 residues), 520.2 bits, see alignment E=1.1e-160 PF06723: MreB_Mbl" amino acids 11 to 340 (330 residues), 497.5 bits, see alignment E=3.6e-153 PF00022: Actin" amino acids 15 to 206 (192 residues), 31.4 bits, see alignment E=2e-11 PF00012: HSP70" amino acids 101 to 208 (108 residues), 52.2 bits, see alignment E=8.1e-18 PF14450: FtsA" amino acids 163 to 321 (159 residues), 43 bits, see alignment E=1.4e-14

Best Hits

Swiss-Prot: 73% identical to MREB_ECOLI: Cell shape-determining protein MreB (mreB) from Escherichia coli (strain K12)

KEGG orthology group: K03569, rod shape-determining protein MreB and related proteins (inferred from 99% identity to rsc:RCFBP_21385)

Predicted SEED Role

"Rod shape-determining protein MreB" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (347 amino acids)

>ABZR87_RS05030 rod shape-determining protein (Ralstonia sp. UNC404CL21Col)
MFGFLRSYFSNDLAIDLGTANTLIYVRDKGIVLDEPSVVAIRQEGGPNAKKTIQAVGKEA
KQMLGKVPGNIEAIRPMKDGVIADFTVTEQMLKQFIKMVHDTKLLRPSPRIIICVPCGST
QVERRAIRESALGAGASQVYLIEEPMAAAIGAGLPVSEPSGSMVVDIGGGTTEVGIISLG
GMVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEQTAEAIKKEIGSAFPGSEVREMEVKGR
NLSEGIPRAFTVSSNEILEALTDPLNQIVSSVKIALEQTPPELGADIAERGMMLTGGGAL
LRDLDRLLAEETGLPVLVAEDPLTCVVRGSGMALERMDKLGSIFSYE