Protein Info for ABZR87_RS04885 in Ralstonia sp. UNC404CL21Col

Annotation: lytic transglycosylase domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF14718: SLT_L" amino acids 404 to 464 (61 residues), 31.8 bits, see alignment 1.3e-11 PF01464: SLT" amino acids 481 to 587 (107 residues), 77.3 bits, see alignment E=7.1e-26

Best Hits

KEGG orthology group: K08309, soluble lytic murein transglycosylase [EC: 3.2.1.-] (inferred from 98% identity to rpf:Rpic12D_3339)

Predicted SEED Role

"Soluble lytic murein transglycosylase precursor (EC 3.2.1.-)" (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (650 amino acids)

>ABZR87_RS04885 lytic transglycosylase domain-containing protein (Ralstonia sp. UNC404CL21Col)
MTLKAKAVYRAVALAFAGVVGMSVVGPTPLAVAAKRQAPQGIPANPDDAFVELRNASRRN
DVSRSWELADSLSDYPIQSYVQYFRIKPQLFDASGYARTDAPEDEIRSFLQRYKGEAIAD
RLRNDWLLVLGKKRDWATFDAEYPNFVLKDDTQVECYALLSRAMKGQNVAAEARNTLSDP
KGYGEGCVDLIGYLAQSKQFTRADVAFAARLSLEQNLVTQASRIAAVLPDGDRVDNDTLA
NVTRMARNDPSQATAYLLAQTGSLSREEQGAGWGVIGQYAAKKQTPDALDAYRRQLTLGG
DAYLSDESQEWRVRAALRAGDWKMVRQAVEKMRPSLRDRDPAWTYWYGRALKADNRNDEA
RQQFQSIAGQFNFYGQLAQEELGQRITVPPRTTVTDAEIDVMGRNHPGFGRAKKLYDLNL
RFEGNREWNWELRNMSDRELLAAAEYGRKLGLLDRTVNSADKTKAEHDFALRFPTPYLNV
VQRNADAVGLDIAWAYGLIRQESRFIMDARSSVGASGLMQVMPETAKHIAKKIGLPGFRV
SQMSDIDTNVLLGTAYLSMILTNLDSSVTLATAGYNAGPGRPKRWRSTLTRPVEGAIFAE
TIPFNETRTYVKNVLSNATYYSALLTGRPQSLKDRLGKVVPESVTPDDLP