Protein Info for ABZR87_RS04645 in Ralstonia sp. UNC404CL21Col

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 45 to 66 (22 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 136 to 158 (23 residues), see Phobius details amino acids 164 to 182 (19 residues), see Phobius details amino acids 220 to 242 (23 residues), see Phobius details amino acids 254 to 271 (18 residues), see Phobius details amino acids 283 to 300 (18 residues), see Phobius details amino acids 306 to 325 (20 residues), see Phobius details amino acids 343 to 366 (24 residues), see Phobius details amino acids 377 to 395 (19 residues), see Phobius details PF07690: MFS_1" amino acids 16 to 228 (213 residues), 111.5 bits, see alignment E=4.4e-36 amino acids 221 to 399 (179 residues), 56.5 bits, see alignment E=2.3e-19 PF00083: Sugar_tr" amino acids 51 to 181 (131 residues), 26.8 bits, see alignment E=2.5e-10

Best Hits

KEGG orthology group: None (inferred from 98% identity to rpf:Rpic12D_3292)

Predicted SEED Role

"FIG00976637: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (439 amino acids)

>ABZR87_RS04645 MFS transporter (Ralstonia sp. UNC404CL21Col)
MPLLDPSRERRLLWLLALTQFTVIMDFMVMMPLGPQIMHTFGIGPAAFATAVSVYSLCSG
ASGLLAATYIDRFDRRRLLLAVYGLFTLANLACALSGSYSMLLFARAFAGVTGGVLGSII
MAVLSDVIPPARRGAATGVVMSSFALAAMAGVPVGIAIGAHFGWSAPFFLLTALTVLIWL
GARQTVPPLAEHLAGNRSQTLGEVLSGLWRLLTNPRHLRAFVLTFVMMGSHMLVIPFISP
VLVANHGVAPENLSWLYVAGGAASFFSSRAVGKLADRYGRRRVFVGAALLAFIPVLLMTH
LPDWPFIGMLLFFPFFMVILSSRMVPMQALMTTVPAPQVRGAFLSANSAVMSVGTGVGAW
VGGLLLSGGAGGRIEGYGLNGWLAVAAGLFCVFWVSQVKGSDAQGDPSLAASPAAPASGS
PAGAAGPQTVPQAPQAEKA