Protein Info for ABZR87_RS04390 in Ralstonia sp. UNC404CL21Col

Annotation: autotransporter outer membrane beta-barrel domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1163 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF12951: PATR" amino acids 296 to 320 (25 residues), 16 bits, see alignment (E = 1.6e-06) amino acids 356 to 385 (30 residues), 40.7 bits, see alignment (E = 2.8e-14) amino acids 447 to 476 (30 residues), 47.8 bits, see alignment (E = 1.7e-16) amino acids 517 to 544 (28 residues), 33.5 bits, see alignment (E = 5.1e-12) amino acids 583 to 612 (30 residues), 21 bits, see alignment (E = 4.1e-08) TIGR02601: autotransporter-associated beta strand repeat" amino acids 355 to 386 (32 residues), 38.3 bits, see alignment (E = 8.8e-14) amino acids 446 to 477 (32 residues), 45.7 bits, see alignment (E = 4.2e-16) amino acids 515 to 545 (31 residues), 34.8 bits, see alignment (E = 1.1e-12) TIGR01414: outer membrane autotransporter barrel domain" amino acids 701 to 1163 (463 residues), 235.8 bits, see alignment E=1e-73 PF18883: AC_1" amino acids 703 to 797 (95 residues), 104 bits, see alignment E=7.2e-34 PF03797: Autotransporter" amino acids 888 to 1140 (253 residues), 140.6 bits, see alignment E=1.2e-44

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1163 amino acids)

>ABZR87_RS04390 autotransporter outer membrane beta-barrel domain-containing protein (Ralstonia sp. UNC404CL21Col)
MSTPLFQRRRGRLQFVSIALVASPFALFGALAHADCTTTGQTTVCDSAAPNPTTSTIGAG
NVAAEDNRVVTVQTGSTVAVGDTSAIAVRDNANITVQSGATVSANAVSTSGFYGTGGNAI
DFRNNSTLTVQQGGQVLANGTQLSGEAVNPEGTGNTIVNNGLIKSAHGAAIWFQNTTGGN
TVVNNATGTIQTDVANGNVMGASGNGSVDFTNRGKVVGNLIFAGGNDALHLYTGSSVSGS
ISGGGGANVITLNGTDSATLGTITNFQTLRKQDSGTWTLSKTLASMGVTNAQVQQGTLIV
QGNNSAYTGTMQVDAGGTLQGDALSVTKAVTNNGLVRFQQDVDGSYAGQIVGAGALEKTG
TGTLTLAAGNTYSGGTTITQGTLAIGADSALGGAAGALTLNGGTLQLTGNVDVAGTRAVS
ITNANGTIDTQGFTSTVSQGISGAGALTKAGSGTLVLAGDNTYQGGTTIAAGTLQLGNGG
ASGSVAGDVVNNGTLAFNRSDTYTYDGQISGTGAVNQSGTGTTVLTNDHTYSGGTTISAG
SLQLGNGGTSGSITGNVVDNGTLVFNRSDVFTFGGTVAGTGGITQAGTGTTVLTANNAIQ
GNTVVASGALAIGDAAHAGATLGVSGSTGPQSLRTMAAGGSTVQIAANATLGGYGTVNGA
VTNNGTVAVADALAAFANTGSGSLTINGALSNAGTVQIGGAGVGNKLVVNGNYVSNGGVL
AINTKLGADNSPTDKLVISGGTASGNTAVRVTNAGGAGARTTGDGIEVVSAINGATTQAN
AFALANRVVAGPYEYTLQRGGSASADSWYLRTLQTSTQGTGGGTTGTGTGTGTTQPALRP
EVSLYTAIPQLTLLYGRALLDTLHERVGEESNQAAAPAGTSPVLRTGWARVIAQKGSRMS
DGNGVYGNQGPAFSYDFGGVQFGADVYQRQREDGSHDHAGGYFATGRIAADVTHADGADA
GRDTVNANTVGLYWTHFGPSGWYLDGVVQGTRYDADASPHGVNGLKTHALGYAASLEAGY
PIALSPQWRVEPQAQLVYQRAAFADANDGAADVRFNSVNSMLGRLGVRVSKRWGESPECQ
HTAWVRANVWHEFRGQTGTQMSSPDGGFVPFTAQLPSTTLELTGGLTAQVAKNGVFYASV
GYQVSADRRLHGVNGKAGVRWGW