Protein Info for ABZR87_RS04165 in Ralstonia sp. UNC404CL21Col

Annotation: SDR family oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 322 PF00106: adh_short" amino acids 11 to 54 (44 residues), 27.2 bits, see alignment 7.8e-10 PF01370: Epimerase" amino acids 12 to 226 (215 residues), 42.4 bits, see alignment E=1.7e-14 PF04321: RmlD_sub_bind" amino acids 13 to 253 (241 residues), 31.7 bits, see alignment E=2.7e-11 PF05368: NmrA" amino acids 13 to 224 (212 residues), 31.7 bits, see alignment E=3.3e-11 PF13460: NAD_binding_10" amino acids 16 to 148 (133 residues), 50.5 bits, see alignment E=7.2e-17

Best Hits

KEGG orthology group: None (inferred from 98% identity to rpf:Rpic12D_3203)

Predicted SEED Role

"Nucleoside-diphosphate-sugar epimerases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (322 amino acids)

>ABZR87_RS04165 SDR family oxidoreductase (Ralstonia sp. UNC404CL21Col)
MEQANQQAKRIALVLGATGGIGGEVARRLVARGWHVRALQRNPEALTNRNTAFEWIRGDA
MVREDVVGAAQGAELIIHAVNPPGYQNWAGLVLPMIDNTIAAARASGARIVLPGTVYNFA
PDTFPLLRETTAQAPLTRKGKIRAELERRMQAASADGVRSLIVRAGDFFGPQTGNTWFAG
ALVKPGKPVRTVTQPGAAGIGHQWAYLPDVAETMLRLVEQGDRLPNFAVYHMRGHWDADG
TQMAAAIGRAVGRPVKTRAFPWWLMPALAPFSEMLREMREMRYLWQYPVRMDNAKLVQAL
GAEPHTPWDEAVGATLRSLGCR