Protein Info for ABZR87_RS04060 in Ralstonia sp. UNC404CL21Col

Annotation: DUF6600 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 793 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF20245: DUF6600" amino acids 239 to 357 (119 residues), 91.6 bits, see alignment E=1.5e-30

Best Hits

KEGG orthology group: None (inferred from 95% identity to rpf:Rpic12D_3185)

Predicted SEED Role

"putative prolin-rich exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (793 amino acids)

>ABZR87_RS04060 DUF6600 domain-containing protein (Ralstonia sp. UNC404CL21Col)
MSKASRRSALSGVRLPHVLRAVGVAAVLLVCGAQAAMAADPASRVARLSDFSGTVSFAPA
GSDDWAGASLNRPLTTGDRLWSDQGSHSELHVGSTALRLGQNTGATLVDLDDRNTQVKLT
QGALSVRVRSLPPDQTIEIDTPNLAFTPQAPGEYRLDVAPDGSSTTVTVWRGQGTAYGDD
RSTPLDAGQQIRFGGTDLAEVGGTDNPGRDAFDRWAESRDAREDASVSARYVGREMTGYE
ALDDNGTWREEDGYGAVWVPRAVPAGWAPYRTGHWAWVAPWGWTWVDDAPWGFAPFHYGR
WAYVGTTWCWVPGPVVPRPVYAPALVGFVGGGGGGGVSWGINISIGSPGVAWFPLAPGEA
YRPVYAASPTYVTNINRTVVVNNVTVNKTIINNTNVTNIRNVNRVTYVNANNPAALTAVP
AKTFVNGQPVGPAMTHLRPEQLRAQMAHAQFVSTPALAPVRASLVGAAANGGPHQLPPQQ
VFARQAIAVRAPAAPAGGHDALAERFRSQGGALPGAGPAWTGGNVSPRIAPVRGQASAGM
PPAPIAAQAAGLRLSRAAQNGQSGPARAGGESGRPPEQHGANGPQGLIGSPNPQGGQPQH
GGQPGPAPQALMAPGSINRPRPQPGAAAPQERPAQPQTAQAPQGPAGMTTRPPQREGAPG
APRDERHAFEPRPQLPQAPQPQPQLQPQRGGQEPNRFNGNPAATLQERPHNEPPQMRVPR
EPEQRRPEPRMEAPRPAPQPHVEMRPPQPQPQPRPPEARPPQPQTQPPRQEHHESQPHPQ
GNRGEEKREGEHR