Protein Info for ABZR87_RS03780 in Ralstonia sp. UNC404CL21Col

Annotation: thiosulfate oxidation carrier protein SoxY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 156 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details TIGR04488: thiosulfate oxidation carrier protein SoxY" amino acids 8 to 156 (149 residues), 167.1 bits, see alignment E=1.8e-53 PF13501: SoxY" amino acids 53 to 154 (102 residues), 107.5 bits, see alignment E=2.3e-35

Best Hits

KEGG orthology group: None (inferred from 99% identity to rpf:Rpic12D_3129)

MetaCyc: 42% identical to SoxY (Paracoccus pantotrophus)

Predicted SEED Role

"Sulfur oxidation protein SoxY" in subsystem Sulfur oxidation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (156 amino acids)

>ABZR87_RS03780 thiosulfate oxidation carrier protein SoxY (Ralstonia sp. UNC404CL21Col)
MNDAINLSRRDVLRAGAMMALLVSAGIATPAQAAEWNKAAFAVKGVNDVLKQLGGGAVDK
GGAGIQLTAPDIAENGAVVPLVVTSTLPGTDLIAILVEKNPNTLAATFAIPAGTDPFVST
RVKMGETSTVYAAVRANGKWVLASKEVKVTLGGCGG