Protein Info for ABZR87_RS03765 in Ralstonia sp. UNC404CL21Col

Annotation: sulfur oxidation c-type cytochrome SoxA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details TIGR04484: sulfur oxidation c-type cytochrome SoxA" amino acids 40 to 266 (227 residues), 247.2 bits, see alignment E=5.3e-78 PF21342: SoxA-TsdA_cyt-c" amino acids 48 to 144 (97 residues), 88.3 bits, see alignment E=1.4e-29

Best Hits

Swiss-Prot: 53% identical to SOXA_HYDTE: L-cysteine S-thiosulfotransferase subunit SoxA (soxA) from Hydrogenophilus thermoluteolus

KEGG orthology group: None (inferred from 100% identity to rpi:Rpic_3454)

Predicted SEED Role

"sulfur oxidation protein SoxA" in subsystem Sulfur oxidation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (266 amino acids)

>ABZR87_RS03765 sulfur oxidation c-type cytochrome SoxA (Ralstonia sp. UNC404CL21Col)
MVLAAAWVAGSAVMASAQDAKDSTAAGIAQYREMLADGNPAELWEAAGEELWKKPAGPKQ
ASLEACDLGLGPGVVKGAYAKLPRYFKDTGRVMDAEQRLMHCRMTLQGLTKEEASARPFS
SPGKASDIERLMAYVASESRGAAIDIPLAHPEEKRVYELGRRMFFYRGGAYDFACATCHA
QPGLRIRLQELPDLLTADGARFAYSTWPGYRVSQGEVRTMQHRLYDCLRQQRFPEPLYGS
EVITALEMFLARNANGGKMDAPSIKR