Protein Info for ABZR87_RS03550 in Ralstonia sp. UNC404CL21Col

Annotation: response regulator transcription factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 PF00072: Response_reg" amino acids 11 to 127 (117 residues), 67.4 bits, see alignment E=1.9e-22 PF00196: GerE" amino acids 171 to 222 (52 residues), 45.1 bits, see alignment E=9e-16 PF08281: Sigma70_r4_2" amino acids 171 to 214 (44 residues), 26.2 bits, see alignment 7.7e-10

Best Hits

KEGG orthology group: None (inferred from 94% identity to rpi:Rpic_3417)

Predicted SEED Role

"capsula synthesis response regulator transcription regulator protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (232 amino acids)

>ABZR87_RS03550 response regulator transcription factor (Ralstonia sp. UNC404CL21Col)
MNWTATRPIRVIVLDDHAVVRHGLAARLKQEADIEVAGMFASGRDIVRALKDATVEVDVL
LMDYSLGPTEIDGLNLIRLIRVRYPDLKILVASAHHNKATVGMVMHAGARGFVGKEEELS
ELVRAIRTVAAGGKRLNAALAAEMEHDALSADAPAPAANSTKLSALLDRSELSPREREVL
RCCLDGMSVTDIAEKFARSIKTISSQKQSAYRKLGIRTDTELFKIKHELEGQ